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2dimagefifofilter.hh
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1/* -*- mia-c++ -*-
2 *
3 * This file is part of MIA - a toolbox for medical image analysis
4 * Copyright (c) Leipzig, Madrid 1999-2017 Gert Wollny
5 *
6 * MIA is free software; you can redistribute it and/or modify
7 * it under the terms of the GNU General Public License as published by
8 * the Free Software Foundation; either version 3 of the License, or
9 * (at your option) any later version.
10 *
11 * This program is distributed in the hope that it will be useful,
12 * but WITHOUT ANY WARRANTY; without even the implied warranty of
13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14 * GNU General Public License for more details.
15 *
16 * You should have received a copy of the GNU General Public License
17 * along with MIA; if not, see <http://www.gnu.org/licenses/>.
18 *
19 */
20
21#ifndef __mia_2dfifofilterstack_hh
22#define __mia_2dfifofilterstack_hh
23
24#include <mia/2d/image.hh>
25#include <mia/3d/image.hh>
26#include <mia/core/factory.hh>
28#include <mia/core/filter.hh>
29#include <mia/2d/image.hh>
30
32
37struct EXPORT_3D image2d_stack {
38 static const char *data_descr;
39};
40
47template <>
48struct __copy_create_ptr<C2DImage> {
49 static P2DImage apply(const C2DImage& x)
50 {
51 return P2DImage(x.clone());
52 }
53};
55
70{
71public:
72 typedef image2d_stack plugin_data;
73 typedef filter_type plugin_type;
74
83 C2DImageFifoFilter(size_t filter_width, size_t min_fill, size_t read_start);
84protected:
85
92 C3DImage *create_buffer(const C2DBounds& slice_sice, size_t depth, EPixelType type);
93
99 struct CShiftSlices: public TFilter<int> {
100 template <typename T>
101 int operator ()(T3DImage<T>& input) const
102 {
103 copy_backward(input.begin(), input.end() - input.get_size().x
104 * input.get_size().y, input.end());
105 return 0;
106 }
107 };
109};
110
116 public TFactory<C2DImageFifoFilter>
117{
118protected:
123 C2DFifoFilterPlugin(char const *const name);
124
126 typedef std::vector<P2DImage> CImageStack;
127
136 bool call_test(const CImageStack& in_data, const CImageStack& test_data,
138};
139
145
146
147#ifdef __GNUC__
148#pragma GCC diagnostic push
149#ifndef __clang__
150#pragma GCC diagnostic ignored "-Wattributes"
151#endif
152#endif
153
154extern template class EXPORT_3D TFifoFilter<P2DImage>;
155extern template class EXPORT_3D TFifoFilterSink<P2DImage>;
156
157#ifdef __GNUC__
158#pragma GCC diagnostic pop
159#endif
160
166
168
169#endif
C2DImage::Pointer P2DImage
Shared pointer representation of the 2D Image.
Definition: 2d/image.hh:120
The plug-in base class for the FIFO filters.
C2DFifoFilterPlugin(char const *const name)
std::vector< P2DImage > CImageStack
helper class to store a set of images
bool call_test(const CImageStack &in_data, const CImageStack &test_data, C2DImageFifoFilter &filter) const
The class to provide filtering of series of 2D images as if they where 3D images.
C3DImage * create_buffer(const C2DBounds &slice_sice, size_t depth, EPixelType type)
C2DImageFifoFilter(size_t filter_width, size_t min_fill, size_t read_start)
image2d_stack plugin_data
This is the base class for 2D images that can hold generic pixel data.
Definition: 2d/image.hh:48
virtual C2DImage * clone() const __attribute__((warn_unused_result))=0
The generic base type of a 3D image.
Definition: 3d/image.hh:47
The base class for all plug-in created object.
Definition: product_base.hh:41
Specific type of the 3D images that hold real pixel data.
Definition: 3d/image.hh:150
This is tha base of all plugins that create "things", like filters, cost functions time step operator...
Definition: factory.hh:51
Helper class for testing FIFO filter chains.
Definition: fifofilter.hh:159
Generic base class for out-of-core FIFO filters.
Definition: fifofilter.hh:53
the singleton that a plug-in handler really is
Definition: handler.hh:159
#define EXPORT_3D
Definition: defines3d.hh:45
#define NS_MIA_BEGIN
conveniance define to start the mia namespace
Definition: defines.hh:33
#define NS_MIA_END
conveniance define to end the mia namespace
Definition: defines.hh:36
TFifoFilter< P2DImage >::Pointer P2DImageFifoFilter
Pointer type for the FIFO filter.
THandlerSingleton< TFactoryPluginHandler< C2DFifoFilterPlugin > > C2DFifoFilterPluginHandler
Plugin handler for the FIFO filters.
static F::result_type filter(const F &f, const B &b)
Definition: core/filter.hh:258
EPixelType
Definition: pixeltype.hh:32
base class for all filer type functors.
Definition: core/filter.hh:70