pigx-rnaseq (0.1.0-2~0exp0) experimental; urgency=medium

  * Team upload.
  * Experimental rebuild to force testing using bioc-3.19

 -- Michael R. Crusoe <crusoe@debian.org>  Mon, 22 Jul 2024 17:04:04 +0200

pigx-rnaseq (0.1.0-1.1) unstable; urgency=medium

  * Non-maintainer upload.
  * Drop citeproc dependency (no longer required).

 -- Bastian Germann <bage@debian.org>  Tue, 13 Dec 2022 18:23:15 +0000

pigx-rnaseq (0.1.0-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.6.1 (routine-update)
  * Set upstream metadata fields: Repository-Browse.
  * Add M4 files from pigx-common
  * (Build-)Depends: megadepth

 -- Andreas Tille <tille@debian.org>  Thu, 21 Jul 2022 17:52:09 +0200

pigx-rnaseq (0.0.19+ds-1) unstable; urgency=medium

  * Team upload.
  * Drop broken autoconf m4 files from upstream source and use
    autoconf-archive instead
    Closes: #1008368
  * Drop files that are not included in upstream source from Files-Excluded
  * Drop transition for old debug package migration.

 -- Andreas Tille <tille@debian.org>  Mon, 28 Mar 2022 14:06:22 +0200

pigx-rnaseq (0.0.19-2) unstable; urgency=medium

  * Team Upload.
  [ Steffen Moeller ]
  * d/contro pigx-rnaseq binary: Added dependency on r-cran-ggpubr
  * recommending both rna-star and hisat2

  [ Nilesh Patra ]
  * d/rules: Export HOME to /tmp to fix FTBFS (Closes: #997320)

 -- Nilesh Patra <nilesh@debian.org>  Sun, 24 Oct 2021 02:04:47 +0530

pigx-rnaseq (0.0.19-1) unstable; urgency=medium

  * Team Upload.
  [ Steffen Moeller ]
  * New upstream version 0.0.19
  * Bumped policy to 4.6.0
  * New dependencies
    - hisat2 - upstream changed default genomic aligner
    - fastp - fastq file processing
    - r-cran-gprofiler2
  * d/u/metadata: Added ref to SciCrunch RRID:SCR_016476
  * overriding dh_fixperms on permissions in /usr/libexec
  * Added ref to guix

  [ Nilesh Patra ]
  * Remove d/p/salmon_sa.bin2pos.bin.patch: Merged upstream
  * Pass gunzip and sed paths during configure
    so it builds reproducible on usrmerge system
    (Closes: #985144)
  * Add d/common: The pigx-rnaseq is a submodule needed by this package,
    But this has no code, and does not look worth it to package.
    Since its size is very less, it has been added in debian/ dir
    Changes have also been mentioned in d/copyright
  * Add B-D on r-cran-ggpubr and r-cran-gprofiler2

 -- Nilesh Patra <nilesh@debian.org>  Thu, 16 Sep 2021 02:16:16 +0530

pigx-rnaseq (0.0.10+ds-2) unstable; urgency=medium

  * Team upload.
  * debhelper-compat 13 (routine-update)

 -- Andreas Tille <tille@debian.org>  Fri, 23 Oct 2020 15:42:32 +0200

pigx-rnaseq (0.0.10+ds-1) unstable; urgency=medium

  * Initial release (Closes: #934041)

 -- Steffen Moeller <moeller@debian.org>  Mon, 05 Aug 2019 14:48:15 +0200
